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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16868-RA through 18771 annotations produced 1 hits



(CG16868):

Annotation Number : CG16868
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034498
Gbrowse : chr2R:16169133-16174584 (-) // 100.0 //
Probeset : 1632397_at
Accessions : protein= NP_611469;, nucleotide= NM_137625;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0034498.
BDGP gene expression has embryonic in situ data for CG16868: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034498 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034498 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 44 of 4 1.10None
Head37 14 of 4 0.50Down
Eye35 14 of 4 0.45Down
Thoracicoabdominal ganglion76 54 of 4 1.00None
Salivary gland92 44 of 4 1.16None
Crop56 34 of 4 0.70Down
Midgut66 24 of 4 0.80None
Tubule64 04 of 4 0.80Down
Hindgut49 24 of 4 0.60Down
Heart28 34 of 4 0.36Down
Fat body27 34 of 4 0.35Down
Ovary297 74 of 4 3.70Up
Testis41 14 of 4 0.50Down
Male accessory glands85 64 of 4 1.10None
Virgin spermatheca57 14 of 4 0.73Down
Mated spermatheca62 74 of 4 0.79None
Adult carcass37 24 of 4 0.50Down
Larval CNS173 64 of 4 2.18Up
Larval Salivary gland109 64 of 4 1.38Up
Larval midgut69 44 of 4 0.87None
Larval tubule93 04 of 4 1.20None
Larval hindgut82 14 of 4 1.04None
Larval fat body47 24 of 4 0.60Down
Larval trachea81 94 of 4 1.02None
Larval carcass84 34 of 4 1.06None
S2 cells (growing)134 14 of 4 1.69Up
Whole fly79 74 of 4

Looking for CG16868-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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