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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16873-RA through 18771 annotations produced 1 hits



CG16873 (nimB5):

Annotation Number : CG16873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028936
Gbrowse : chr2L:13970558-13971685 (+) // 100.0 //
Probeset : 1630412_at
Accessions : protein= NP_609692;, nucleotide= NM_135848;
FlyMine data for FBgn0028936.
TRiP has 1 RNAi stocks for FBgn0028936 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 34 of 4 0.60Down
Head121 54 of 4 4.30Up
Eye60 94 of 4 2.17Up
Thoracicoabdominal ganglion8 11 of 4 0.30Down
Salivary gland4 20 of 4 0.16Down
Crop3 10 of 4 0.10Down
Midgut4 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut6 10 of 4 0.20Down
Heart329 134 of 411.70Up
Fat body218 224 of 4 7.76Up
Ovary1 00 of 4 0.00Down
Testis12 23 of 4 0.50Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca85 74 of 4 3.04Up
Mated spermatheca106 104 of 4 3.80Up
Adult carcass135 84 of 4 4.80Up
Larval CNS2 10 of 4 0.08Down
Larval Salivary gland12 10 of 4 0.43Down
Larval midgut9 00 of 4 0.32Down
Larval tubule6 20 of 4 0.20Down
Larval hindgut8 00 of 4 0.30Down
Larval fat body631 684 of 422.40Up
Larval trachea14 12 of 4 0.53Down
Larval carcass5 10 of 4 0.19Down
S2 cells (growing)5 10 of 4 0.21Down
Whole fly28 14 of 4

Looking for CG16873-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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