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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG16879-RA through 18771 annotations produced 1 hits


Annotation Number : CG16879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028904
Gbrowse : chr2L:14104653-14106684 (+) // 100.0 //
Probeset : 1625704_at
Accessions : protein= NP_609701;, nucleotide= NM_135857;
FlyMine data for FBgn0028904.
VDRC has 3 RNAi stocks for FBgn0028904 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 1.40None
Head3 10 of 4 0.50None
Eye1 10 of 4 0.30Down
Thoracicoabdominal ganglion7 10 of 4 1.20None
Salivary gland15 30 of 4 2.28None
Crop6 10 of 4 1.00None
Midgut6 10 of 4 0.90None
Tubule8 00 of 4 1.20Up
Hindgut7 20 of 4 1.20None
Heart1 00 of 4 0.16Down
Fat body8 30 of 4 1.33None
Ovary4 10 of 4 0.70None
Testis3 10 of 4 0.50None
Male accessory glands4 10 of 4 0.70None
Virgin spermatheca12 00 of 4 1.89Up
Mated spermatheca16 41 of 4 2.50None
Adult carcass12 10 of 4 1.90Up
Larval CNS30 64 of 4 4.63Up
Larval Salivary gland10 10 of 4 1.66None
Larval midgut2 00 of 4 0.35Down
Larval tubule10 11 of 4 1.60Up
Larval hindgut3 10 of 4 0.53None
Larval fat body10 30 of 4 1.60None
Larval trachea3 30 of 4 0.52None
Larval carcass8 10 of 4 1.30None
S2 cells (growing)6 00 of 4 0.97None
Whole fly6 10 of 4

Looking for CG16879-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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