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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16880-RA through 18771 annotations produced 1 hits



lethal (2) 34Fa (nimC3):

Annotation Number : CG16880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001967
Gbrowse : chr2L:14018733-14020301 (-) // 100.0 //
Probeset : 1634237_at
Accessions : protein= NP_524928;, nucleotide= NM_080189;
Pathway : 0005639 // integral to nuclear inner membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0001967.
BioGrid reports that CG16880 interacts with CG8458 .
VDRC has 4 RNAi stocks for FBgn0001967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.20Down
Head37 74 of 4 1.20None
Eye45 64 of 4 1.43None
Thoracicoabdominal ganglion6 21 of 4 0.20Down
Salivary gland12 31 of 4 0.40Down
Crop28 14 of 4 0.90None
Midgut70 54 of 4 2.20Up
Tubule8 11 of 4 0.30Down
Hindgut19 04 of 4 0.60None
Heart88 114 of 4 2.79Up
Fat body134 214 of 4 4.27Up
Ovary43 34 of 4 1.40None
Testis2 01 of 4 0.10Down
Male accessory glands39 54 of 4 1.30None
Virgin spermatheca60 44 of 4 1.92Up
Mated spermatheca59 44 of 4 1.90Up
Adult carcass52 64 of 4 1.60Up
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland6 11 of 4 0.19Down
Larval midgut132 84 of 4 4.18Up
Larval tubule5 11 of 4 0.20Down
Larval hindgut11 04 of 4 0.35Down
Larval fat body30 54 of 4 1.00None
Larval trachea3 41 of 4 0.10Down
Larval carcass6 22 of 4 0.20Down
S2 cells (growing)1 10 of 4 0.06Down
Whole fly31 54 of 4

Looking for CG16880-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime