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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG16887-RA through 18771 annotations produced 1 hits


Annotation Number : CG16887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053307
Gbrowse : chr2L:13840801-13843742 (-) // 100.0 //
Probeset : 1623813_at
Accessions : protein= NP_995705;, nucleotide= NM_205983;
FlyMine data for FBgn0053307.
VDRC has 3 RNAi stocks for FBgn0053307 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 0.20Down
Head725 304 of 4 5.80Up
Eye342 924 of 4 2.72None
Thoracicoabdominal ganglion18 34 of 4 0.10Down
Salivary gland14 40 of 4 0.12Down
Crop12 21 of 4 0.10Down
Midgut10 20 of 4 0.10Down
Tubule21 42 of 4 0.20Down
Hindgut53 44 of 4 0.40Down
Heart817 774 of 4 6.48Up
Fat body1464 794 of 411.61Up
Ovary4 10 of 4 0.00Down
Testis4 10 of 4 0.00Down
Male accessory glands9 40 of 4 0.10Down
Virgin spermatheca1447 774 of 411.48Up
Mated spermatheca1150 234 of 4 9.12Up
Adult carcass652 524 of 4 5.20Up
Larval CNS21 54 of 4 0.17Down
Larval Salivary gland83 124 of 4 0.67Down
Larval midgut40 43 of 4 0.32Down
Larval tubule12 20 of 4 0.10Down
Larval hindgut81 134 of 4 0.64Down
Larval fat body1441 1384 of 411.40Up
Larval trachea62 623 of 4 0.50None
Larval carcass44 54 of 4 0.36Down
S2 cells (growing)776 104 of 4 6.16Up
Whole fly126 94 of 4

Looking for CG16887-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime