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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16904-RA through 18771 annotations produced 1 hits



(CG16904):

Annotation Number : CG16904
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037763
Gbrowse : chr3R:5641648-5642709 (-) // 100.0 //
Probeset : 1638774_at
Accessions : protein= NP_649957;, nucleotide= NM_141700;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037763.
BDGP gene expression has embryonic in situ data for CG16904: 4 pix of staining in 1 body parts.
Homophila reports that CG16904 is a close match (1e-28) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
BioGrid reports that CG16904 interacts with CG17592 CG17829 CG8292 .
VDRC has 1 RNAi stocks for FBgn0037763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head7 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion65 ± 631 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.00Down
Crop13 ± 81 of 4 0.00Down
Midgut9 ± 20 of 4 0.00Down
Tubule87 ± 412 of 4 0.10Down
Hindgut25 ± 143 of 4 0.00Down
Heart5996 ± 4074 of 4 4.68Up
Fat body4684 ± 5584 of 4 3.66Up
Ovary5 ± 10 of 4 0.00Down
Testis104 ± 44 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca8 ± 10 of 4 0.01Down
Mated spermatheca9 ± 31 of 4 0.01Down
Adult carcass4850 ± 934 of 4 3.80Up
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland3 ± 10 of 4 0.00Down
Larval midgut13 ± 21 of 4 0.01Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.00Down
Larval fat body28 ± 113 of 4 0.00Down
Larval trachea3 ± 20 of 4 0.00Down
Larval carcass33 ± 103 of 4 0.03Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1280 ± 934 of 4

Looking for CG16904-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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