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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16905-RA through 18771 annotations produced 1 hits



CG16905 (eloF):

Annotation Number : CG16905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037762
Gbrowse : chr3R:5639896-5640742 (+) // 100.0 //
Probeset : 1632453_at
Accessions : protein= NP_649956;, nucleotide= NM_141699;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0009922 // fatty acid elongase activity // inferred from direct assay
FlyMine data for FBgn0037762.
Homophila reports that CG16905 is a close match (6e-31) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 4 RNAi stocks for FBgn0037762 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion18 ± 131 of 4 0.00Down
Salivary gland16 ± 30 of 4 0.03Down
Crop9 ± 21 of 4 0.00Down
Midgut6 ± 20 of 4 0.00Down
Tubule23 ± 121 of 4 0.00Down
Hindgut19 ± 93 of 4 0.00Down
Heart4492 ± 2814 of 4 8.91Up
Fat body3816 ± 3254 of 4 7.57Up
Ovary4 ± 11 of 4 0.00Down
Testis7 ± 12 of 4 0.00Down
Male accessory glands12 ± 20 of 4 0.00Down
Virgin spermatheca7 ± 02 of 4 0.01Down
Mated spermatheca13 ± 53 of 4 0.03Down
Adult carcass3157 ± 1294 of 4 6.30Up
Larval CNS5 ± 21 of 4 0.01Down
Larval Salivary gland11 ± 21 of 4 0.02Down
Larval midgut10 ± 10 of 4 0.02Down
Larval tubule10 ± 22 of 4 0.00Down
Larval hindgut7 ± 12 of 4 0.02Down
Larval fat body14 ± 23 of 4 0.00Down
Larval trachea4 ± 22 of 4 0.01Down
Larval carcass47 ± 74 of 4 0.09Down
S2 cells (growing)7 ± 10 of 4 0.01Down
Whole fly504 ± 264 of 4

Looking for CG16905-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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