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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16916-RA through 18771 annotations produced 1 hits



chrX:11019220-11020840 (+) // 100.0 // (Rpt3):

Annotation Number : CG16916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637341_at
Accessions : protein= , nucleotide= NP_572686;
Pathway : 0006508 // proteolysis // inferred from direct assay /// 0006508 // proteolysis // inferred from sequence or structural
Interpro : "0000502 // proteasome complex // inferred from electronic annotation /// 0001673 // male germ cell nucleus // inferred
FlyMine data for full length.
Homophila reports that CG16916 is a close match (3e-26) to human gene CAR;CMAR;PGN;SPG7 (NP_955399), a gene associated with Spastic paraplegia-7, 607259 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain317 114 of 4 0.60Down
Head344 164 of 4 0.70Down
Eye380 174 of 4 0.72Down
Thoracicoabdominal ganglion288 44 of 4 0.50Down
Salivary gland449 334 of 4 0.85None
Crop556 84 of 4 1.10None
Midgut509 224 of 4 1.00None
Tubule561 114 of 4 1.10Up
Hindgut442 44 of 4 0.80Down
Heart971 364 of 4 1.84Up
Fat body770 674 of 4 1.46Up
Ovary733 84 of 4 1.40Up
Testis85 34 of 4 0.20Down
Male accessory glands346 184 of 4 0.70Down
Virgin spermatheca366 84 of 4 0.69Down
Mated spermatheca361 134 of 4 0.68Down
Adult carcass631 274 of 4 1.20Up
Larval CNS667 314 of 4 1.26Up
Larval Salivary gland965 374 of 4 1.83Up
Larval midgut735 724 of 4 1.39None
Larval tubule1488 204 of 4 2.80Up
Larval hindgut837 644 of 4 1.58Up
Larval fat body639 494 of 4 1.20None
Larval trachea727 784 of 4 1.37Up
Larval carcass1280 1464 of 4 2.42Up
S2 cells (growing)642 94 of 4 1.22Up
Whole fly528 164 of 4

Looking for CG16916-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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