FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16928-RA through 18771 annotations produced 1 hits

meiotic recombination 11 (mre11):

Annotation Number : CG16928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020270
Gbrowse : chr2L:11282092-11284337 (+) // 100.0 //
Probeset : 1637151_at
Accessions : protein= NP_523547;, nucleotide= NM_078823;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0004518 // nuclease activity // inferred from electronic annotation /// 0004519 // endonuclease activity // inferred fro
FlyMine data for FBgn0020270.
Homophila reports that CG16928 is a close match (4e-114) to human gene ATLD;MRE11;MRE11A (NP_005582), a gene associated with Ataxia-telangiectasia-like disorder, 604391 (3).
TRiP has 1 RNAi stocks for FBgn0020270 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020270 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	160 ± 3	4 of 4	0.90	None
Head	122 ± 5	4 of 4	0.70	None
Eye	159 ± 3	4 of 4	0.87	None
Thoracicoabdominal ganglion	236 ± 14	4 of 4	1.30	None
Salivary gland	219 ± 10	4 of 4	1.20	None
Crop	167 ± 4	4 of 4	0.90	None
Midgut	121 ± 8	4 of 4	0.70	Down
Tubule	299 ± 6	4 of 4	1.60	Up
Hindgut	133 ± 4	4 of 4	0.70	None
Heart	199 ± 7	4 of 4	1.09	None
Fat body	103 ± 18	4 of 4	0.57	Down
Ovary	309 ± 10	4 of 4	1.70	Up
Testis	38 ± 4	4 of 4	0.20	Down
Male accessory glands	222 ± 4	4 of 4	1.20	None
Virgin spermatheca	205 ± 12	4 of 4	1.12	None
Mated spermatheca	280 ± 22	4 of 4	1.53	Up
Adult carcass	124 ± 13	4 of 4	0.70	None
Larval CNS	324 ± 19	4 of 4	1.77	Up
Larval Salivary gland	149 ± 11	4 of 4	0.82	None
Larval midgut	141 ± 8	4 of 4	0.77	None
Larval tubule	214 ± 12	4 of 4	1.20	None
Larval hindgut	208 ± 9	4 of 4	1.14	None
Larval fat body	78 ± 11	4 of 4	0.40	Down
Larval trachea	309 ± 53	4 of 4	1.69	Up
Larval carcass	133 ± 8	4 of 4	0.73	None
S2 cells (growing)	271 ± 4	4 of 4	1.48	Up
Whole fly	183 ± 19	4 of 4

Looking for CG16928-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720