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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16932-RC through 18771 annotations produced 1 hits



Eps-15 (Eps-15):

Annotation Number : CG16932
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035060
Gbrowse : chr2R:20655836-20662788 (-) // 100.0 //
Probeset : 1633729_a_at
Accessions : protein= NP_611965; /// NP_726481; /// NP_726482;, nucleotide= NM_138121; /// NM_166686; /// NM_166687;
Pathway : 0008021 // synaptic vesicle // inferred from direct assay
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0035060.
TRiP has 3 RNAi stocks for FBgn0035060 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain119 44 of 4 1.20None
Head89 24 of 4 0.90None
Eye216 84 of 4 2.09Up
Thoracicoabdominal ganglion160 34 of 4 1.50Up
Salivary gland70 54 of 4 0.68Down
Crop70 24 of 4 0.70Down
Midgut69 54 of 4 0.70Down
Tubule136 24 of 4 1.30Up
Hindgut86 24 of 4 0.80None
Heart146 54 of 4 1.41Up
Fat body68 74 of 4 0.66Down
Ovary172 34 of 4 1.70Up
Testis212 194 of 4 2.10Up
Male accessory glands60 114 of 4 0.60Down
Virgin spermatheca83 34 of 4 0.80None
Mated spermatheca84 44 of 4 0.81None
Adult carcass89 74 of 4 0.90None
Larval CNS132 34 of 4 1.28None
Larval Salivary gland87 34 of 4 0.84None
Larval midgut104 44 of 4 1.01None
Larval tubule107 64 of 4 1.00None
Larval hindgut116 24 of 4 1.13None
Larval fat body103 44 of 4 1.00None
Larval trachea184 154 of 4 1.78Up
Larval carcass81 24 of 4 0.79None
S2 cells (growing)334 134 of 4 3.23Up
Whole fly103 104 of 4

Looking for CG16932-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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