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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16936-RA through 18771 annotations produced 1 hits



Glutathione transferase (CG16936):

Annotation Number : CG16936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027590
Gbrowse : chr2R:20654238-20655675 (-) // 100.0 //
Probeset : 1639769_at
Accessions : protein= NP_611964;, nucleotide= NM_138120;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0027590.
VDRC has 3 RNAi stocks for FBgn0027590 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain872 164 of 4 0.70Down
Head2787 604 of 4 2.30Up
Eye4235 734 of 4 3.47Up
Thoracicoabdominal ganglion1164 284 of 4 1.00None
Salivary gland5965 924 of 4 4.88Up
Crop3793 1254 of 4 3.10Up
Midgut2721 534 of 4 2.20Up
Tubule4942 2704 of 4 4.00Up
Hindgut3358 134 of 4 2.70Up
Heart3267 1804 of 4 2.67Up
Fat body3729 1594 of 4 3.05Up
Ovary385 124 of 4 0.30Down
Testis268 124 of 4 0.20Down
Male accessory glands408 154 of 4 0.30Down
Virgin spermatheca3254 1364 of 4 2.66Up
Mated spermatheca3131 804 of 4 2.56Up
Adult carcass3193 454 of 4 2.60Up
Larval CNS901 524 of 4 0.74Down
Larval Salivary gland1848 394 of 4 1.51Up
Larval midgut2552 984 of 4 2.09Up
Larval tubule4979 984 of 4 4.10Up
Larval hindgut2006 364 of 4 1.64Up
Larval fat body4588 4354 of 4 3.80Up
Larval trachea2605 624 of 4 2.13Up
Larval carcass1397 494 of 4 1.14None
S2 cells (growing)1104 224 of 4 0.90None
Whole fly1221 644 of 4

Looking for CG16936-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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