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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1695-RB through 18771 annotations produced 2 hits



/// (CG1695 /// CG32506):

Annotation Number : CG1695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031116 /// FBgn0052506
Gbrowse : chrX:20310367-20314504 (+) // 100.0 //
Probeset : 1638381_s_at
Accessions : protein= NP_608395; /// NP_728346;, nucleotide= NM_134551; /// NM_167705;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0031116 /// FBgn0052506.
BioGrid reports that CG1695 interacts with CG31764 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 ± 14 of 418.00Up
Head18 ± 43 of 4 3.40None
Eye9 ± 12 of 4 1.82None
Thoracicoabdominal ganglion41 ± 74 of 4 7.80Up
Salivary gland7 ± 20 of 4 1.32None
Crop4 ± 20 of 4 0.80None
Midgut3 ± 00 of 4 0.60None
Tubule2 ± 00 of 4 0.40Down
Hindgut2 ± 10 of 4 0.50None
Heart1 ± 10 of 4 0.35None
Fat body6 ± 20 of 4 1.22None
Ovary0 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.60None
Male accessory glands2 ± 10 of 4 0.40None
Virgin spermatheca0 ± 00 of 4 0.16Down
Mated spermatheca1 ± 00 of 4 0.22Down
Adult carcass5 ± 20 of 4 1.10None
Larval CNS21 ± 64 of 4 4.14Up
Larval Salivary gland1 ± 00 of 4 0.18Down
Larval midgut3 ± 10 of 4 0.71None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.41None
Larval fat body0 ± 00 of 4 0.20Down
Larval trachea1 ± 10 of 4 0.32None
Larval carcass0 ± 00 of 4 0.11Down
S2 cells (growing)0 ± 00 of 4 0.10Down
Whole fly5 ± 10 of 4



(CG1695):

Annotation Number : CG1695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031116
Gbrowse : chrX:20310367-20314619 (+) // 100.0 //
Probeset : 1638951_at
Accessions : protein= NP_728346;, nucleotide= NM_167705;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0031116.
BioGrid reports that CG1695 interacts with CG31764 .
VDRC has 3 RNAi stocks for FBgn0031116 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 ± 24 of 414.60Up
Head13 ± 33 of 4 2.50None
Eye20 ± 34 of 4 3.81Up
Thoracicoabdominal ganglion32 ± 44 of 4 6.10Up
Salivary gland5 ± 30 of 4 1.03None
Crop2 ± 10 of 4 0.50None
Midgut3 ± 10 of 4 0.60None
Tubule3 ± 00 of 4 0.60Down
Hindgut2 ± 10 of 4 0.40Down
Heart1 ± 00 of 4 0.22Down
Fat body2 ± 10 of 4 0.51None
Ovary2 ± 00 of 4 0.40Down
Testis4 ± 10 of 4 0.80None
Male accessory glands5 ± 10 of 4 0.90None
Virgin spermatheca1 ± 00 of 4 0.27Down
Mated spermatheca0 ± 00 of 4 0.17Down
Adult carcass6 ± 10 of 4 1.10None
Larval CNS19 ± 54 of 4 3.62Up
Larval Salivary gland2 ± 10 of 4 0.51None
Larval midgut2 ± 10 of 4 0.51None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.21Down
Larval fat body2 ± 10 of 4 0.40None
Larval trachea2 ± 10 of 4 0.39Down
Larval carcass1 ± 10 of 4 0.37Down
S2 cells (growing)1 ± 00 of 4 0.28Down
Whole fly5 ± 00 of 4

Looking for CG1695-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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