FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16952-RA through 18771 annotations produced 1 hits

(CG16952):

Annotation Number : CG16952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030701
Gbrowse : chrX:15764217-15769563 (+) // 99.9 //
Probeset : 1632815_at
Accessions : protein= NP_001162764; /// NP_573085; /// NP_996463; /// NP_996464;, nucleotide= NM_001169293; /// NM_132857; /// NM_206740; /// NM_206741;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030701.
BDGP gene expression has embryonic in situ data for CG16952: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030701 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	394 ± 6	4 of 4	2.90	Up
Head	150 ± 6	4 of 4	1.10	None
Eye	186 ± 12	4 of 4	1.39	Up
Thoracicoabdominal ganglion	339 ± 2	4 of 4	2.50	Up
Salivary gland	204 ± 8	4 of 4	1.52	Up
Crop	137 ± 2	4 of 4	1.00	None
Midgut	41 ± 1	4 of 4	0.30	Down
Tubule	67 ± 0	4 of 4	0.50	Down
Hindgut	84 ± 2	4 of 4	0.60	Down
Heart	75 ± 3	4 of 4	0.56	Down
Fat body	76 ± 5	4 of 4	0.57	Down
Ovary	210 ± 8	4 of 4	1.60	Up
Testis	46 ± 1	4 of 4	0.30	Down
Male accessory glands	95 ± 5	4 of 4	0.70	Down
Virgin spermatheca	93 ± 3	4 of 4	0.70	Down
Mated spermatheca	94 ± 4	4 of 4	0.71	Down
Adult carcass	70 ± 5	4 of 4	0.50	Down
Larval CNS	342 ± 13	4 of 4	2.55	Up
Larval Salivary gland	155 ± 2	4 of 4	1.16	Up
Larval midgut	72 ± 3	4 of 4	0.54	Down
Larval tubule	157 ± 3	4 of 4	1.20	Up
Larval hindgut	134 ± 5	4 of 4	1.00	None
Larval fat body	255 ± 38	4 of 4	1.90	None
Larval trachea	142 ± 6	4 of 4	1.06	None
Larval carcass	118 ± 7	4 of 4	0.89	None
S2 cells (growing)	187 ± 2	4 of 4	1.39	Up
Whole fly	134 ± 3	4 of 4

Looking for CG16952-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720