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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16960-RA through 18771 annotations produced 1 hits



Olfactory receptor 33B.1 (Or33a):

Annotation Number : CG16960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026392
Gbrowse : chr2L:11934504-11935716 (+) // 100.0 //
Probeset : 1636425_at
Accessions : protein= NP_523553;, nucleotide= NM_078829;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026392.
BioGrid reports that CG16960 interacts with CG17358 CG9610 .
VDRC has 3 RNAi stocks for FBgn0026392 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.90None
Head5 11 of 4 2.10None
Eye0 00 of 4 0.39None
Thoracicoabdominal ganglion7 13 of 4 2.90Up
Salivary gland9 30 of 4 3.94None
Crop7 12 of 4 3.00Up
Midgut2 10 of 4 1.10None
Tubule4 00 of 4 1.90Up
Hindgut4 00 of 4 1.90None
Heart1 00 of 4 0.73None
Fat body6 33 of 4 2.85None
Ovary1 00 of 4 0.70None
Testis0 00 of 4 0.30None
Male accessory glands6 20 of 4 2.60None
Virgin spermatheca4 10 of 4 1.85None
Mated spermatheca4 10 of 4 1.66None
Adult carcass9 20 of 4 3.90Up
Larval CNS3 13 of 4 1.25None
Larval Salivary gland5 11 of 4 2.27None
Larval midgut4 21 of 4 1.97None
Larval tubule7 11 of 4 2.90None
Larval hindgut4 10 of 4 1.80None
Larval fat body8 21 of 4 3.40None
Larval trachea2 00 of 4 1.19None
Larval carcass4 00 of 4 1.68None
S2 cells (growing)2 00 of 4 1.07None
Whole fly2 10 of 4

Looking for CG16960-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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