FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16960-RA through 18771 annotations produced 1 hits

Olfactory receptor 33B.1 (Or33a):

Annotation Number : CG16960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026392
Gbrowse : chr2L:11934504-11935716 (+) // 100.0 //
Probeset : 1636425_at
Accessions : protein= NP_523553;, nucleotide= NM_078829;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026392.
BioGrid reports that CG16960 interacts with CG17358 CG9610 .
VDRC has 3 RNAi stocks for FBgn0026392 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.90	None
Head	5 ± 1	1 of 4	2.10	None
Eye	0 ± 0	0 of 4	0.39	None
Thoracicoabdominal ganglion	7 ± 1	3 of 4	2.90	Up
Salivary gland	9 ± 3	0 of 4	3.94	None
Crop	7 ± 1	2 of 4	3.00	Up
Midgut	2 ± 1	0 of 4	1.10	None
Tubule	4 ± 0	0 of 4	1.90	Up
Hindgut	4 ± 0	0 of 4	1.90	None
Heart	1 ± 0	0 of 4	0.73	None
Fat body	6 ± 3	3 of 4	2.85	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	0 ± 0	0 of 4	0.30	None
Male accessory glands	6 ± 2	0 of 4	2.60	None
Virgin spermatheca	4 ± 1	0 of 4	1.85	None
Mated spermatheca	4 ± 1	0 of 4	1.66	None
Adult carcass	9 ± 2	0 of 4	3.90	Up
Larval CNS	3 ± 1	3 of 4	1.25	None
Larval Salivary gland	5 ± 1	1 of 4	2.27	None
Larval midgut	4 ± 2	1 of 4	1.97	None
Larval tubule	7 ± 1	1 of 4	2.90	None
Larval hindgut	4 ± 1	0 of 4	1.80	None
Larval fat body	8 ± 2	1 of 4	3.40	None
Larval trachea	2 ± 0	0 of 4	1.19	None
Larval carcass	4 ± 0	0 of 4	1.68	None
S2 cells (growing)	2 ± 0	0 of 4	1.07	None
Whole fly	2 ± 1	0 of 4

Looking for CG16960-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720