FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG16961-RA through 18771 annotations produced 1 hits

Olfactory receptor 33B.2 (Or33b):

Annotation Number : CG16961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026391
Gbrowse : chr2L:11936180-11937501 (+) // 100.0 //
Probeset : 1631990_at
Accessions : protein= NP_523554;, nucleotide= NM_078830;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026391.
VDRC has 3 RNAi stocks for FBgn0026391 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	1 of 4	1.30	None
Head	4 ± 0	0 of 4	1.10	None
Eye	3 ± 1	1 of 4	0.73	None
Thoracicoabdominal ganglion	5 ± 0	0 of 4	1.20	None
Salivary gland	4 ± 2	0 of 4	1.13	None
Crop	4 ± 2	0 of 4	1.10	None
Midgut	6 ± 1	0 of 4	1.40	None
Tubule	3 ± 0	0 of 4	0.70	Down
Hindgut	5 ± 0	0 of 4	1.30	None
Heart	3 ± 1	0 of 4	0.79	None
Fat body	7 ± 2	0 of 4	1.67	None
Ovary	2 ± 1	0 of 4	0.60	None
Testis	2 ± 0	0 of 4	0.50	None
Male accessory glands	5 ± 1	0 of 4	1.20	None
Virgin spermatheca	1 ± 1	0 of 4	0.43	None
Mated spermatheca	4 ± 1	1 of 4	1.15	None
Adult carcass	7 ± 2	0 of 4	1.60	None
Larval CNS	2 ± 1	0 of 4	0.60	None
Larval Salivary gland	2 ± 0	0 of 4	0.66	None
Larval midgut	5 ± 2	0 of 4	1.24	None
Larval tubule	2 ± 1	0 of 4	0.60	None
Larval hindgut	4 ± 0	0 of 4	1.14	None
Larval fat body	5 ± 1	0 of 4	1.30	None
Larval trachea	4 ± 1	0 of 4	1.02	None
Larval carcass	4 ± 1	0 of 4	1.18	None
S2 cells (growing)	1 ± 0	0 of 4	0.36	Down
Whole fly	4 ± 0	0 of 4

Looking for CG16961-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720