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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16975-RA through 18771 annotations produced 1 hits



CG16975 (Sfmbt):

Annotation Number : CG16975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032475
Gbrowse : chr2L:13169642-13176783 (-) // 100.0 //
Probeset : 1636691_a_at
Accessions : protein= NP_001137821; /// NP_609606; /// NP_723786;, nucleotide= NM_001144349; /// NM_135762; /// NM_165026;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003682 // chromatin binding // inferred from direct a
FlyMine data for FBgn0032475.
BDGP gene expression has embryonic in situ data for CG16975: 21 pix of staining in 10 body parts.
BioGrid reports that CG16975 interacts with CG3528 CG17018 CG2257 CG32672 CG4432 CG33275 .
TRiP has 2 RNAi stocks for FBgn0032475 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain275 164 of 4 1.90Up
Head100 24 of 4 0.70Down
Eye126 54 of 4 0.88None
Thoracicoabdominal ganglion170 44 of 4 1.20None
Salivary gland142 84 of 4 0.99None
Crop132 64 of 4 0.90None
Midgut73 94 of 4 0.50Down
Tubule99 34 of 4 0.70Down
Hindgut106 44 of 4 0.70Down
Heart87 44 of 4 0.61Down
Fat body76 44 of 4 0.53Down
Ovary417 74 of 4 2.90Up
Testis29 14 of 4 0.20Down
Male accessory glands134 34 of 4 0.90None
Virgin spermatheca116 54 of 4 0.81None
Mated spermatheca122 44 of 4 0.85None
Adult carcass89 44 of 4 0.60Down
Larval CNS443 264 of 4 3.08Up
Larval Salivary gland157 74 of 4 1.10None
Larval midgut85 54 of 4 0.60Down
Larval tubule87 34 of 4 0.60Down
Larval hindgut119 24 of 4 0.83None
Larval fat body115 84 of 4 0.80None
Larval trachea186 114 of 4 1.30Up
Larval carcass134 24 of 4 0.93None
S2 cells (growing)184 54 of 4 1.28Up
Whole fly143 104 of 4

Looking for CG16975-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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