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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG16982-RA through 18771 annotations produced 1 hits



Roc1a (Roc1a):

Annotation Number : CG16982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025638
Gbrowse : chrX:541319-542636 (+) // 100.0 //
Probeset : 1624478_at
Accessions : protein= NP_001138143; /// NP_569852;, nucleotide= NM_001144671; /// NM_130496;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00057
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activ
FlyMine data for FBgn0025638.
BDGP gene expression has embryonic in situ data for Roc1a: 4 pix of staining in 1 body parts.
BioGrid reports that CG16982 interacts with CG9060 CG9653 CG1877 CG1512 CG11861 CG8711 .
TRiP has 1 RNAi stocks for FBgn0025638 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025638 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain357 ± 74 of 4 3.20Up
Head238 ± 34 of 4 2.10Up
Eye338 ± 84 of 4 3.00Up
Thoracicoabdominal ganglion379 ± 64 of 4 3.40Up
Salivary gland92 ± 64 of 4 0.83None
Crop251 ± 154 of 4 2.20Up
Midgut94 ± 04 of 4 0.80None
Tubule189 ± 104 of 4 1.70Up
Hindgut165 ± 64 of 4 1.50Up
Heart323 ± 114 of 4 2.88Up
Fat body247 ± 174 of 4 2.19Up
Ovary100 ± 24 of 4 0.90None
Testis14 ± 14 of 4 0.10Down
Male accessory glands38 ± 44 of 4 0.30Down
Virgin spermatheca186 ± 44 of 4 1.65Up
Mated spermatheca156 ± 64 of 4 1.39Up
Adult carcass209 ± 54 of 4 1.90Up
Larval CNS242 ± 334 of 4 2.16Up
Larval Salivary gland52 ± 44 of 4 0.47Down
Larval midgut96 ± 64 of 4 0.86None
Larval tubule302 ± 174 of 4 2.70Up
Larval hindgut122 ± 54 of 4 1.08None
Larval fat body96 ± 134 of 4 0.90None
Larval trachea149 ± 174 of 4 1.33Up
Larval carcass213 ± 234 of 4 1.90Up
S2 cells (growing)94 ± 04 of 4 0.84None
Whole fly112 ± 74 of 4

Looking for CG16982-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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