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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG16986-RA through 18771 annotations produced 1 hits


Annotation Number : CG16986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035356
Gbrowse : chr3L:2600869-2601362 (+) // 100.0 //
Probeset : 1629685_at
Accessions : protein= NP_647732;, nucleotide= NM_139475;
FlyMine data for FBgn0035356.
VDRC has 2 RNAi stocks for FBgn0035356 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain253 14 of 4 0.70Down
Head269 274 of 4 0.70Down
Eye198 54 of 4 0.54Down
Thoracicoabdominal ganglion237 74 of 4 0.60Down
Salivary gland392 64 of 4 1.06None
Crop212 44 of 4 0.60Down
Midgut4076 1174 of 411.00Up
Tubule1002 644 of 4 2.70Up
Hindgut300 104 of 4 0.80Down
Heart324 134 of 4 0.87None
Fat body527 344 of 4 1.42Up
Ovary87 24 of 4 0.20Down
Testis130 44 of 4 0.40Down
Male accessory glands102 44 of 4 0.30Down
Virgin spermatheca705 504 of 4 1.90Up
Mated spermatheca392 214 of 4 1.06None
Adult carcass305 94 of 4 0.80None
Larval CNS105 34 of 4 0.29Down
Larval Salivary gland110 14 of 4 0.30Down
Larval midgut111 34 of 4 0.30Down
Larval tubule154 34 of 4 0.40Down
Larval hindgut131 54 of 4 0.35Down
Larval fat body82 44 of 4 0.20Down
Larval trachea86 54 of 4 0.23Down
Larval carcass107 104 of 4 0.29Down
S2 cells (growing)108 24 of 4 0.29Down
Whole fly371 234 of 4

Looking for CG16986-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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