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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17005-RA through 18771 annotations produced 1 hits



(CG17005):

Annotation Number : CG17005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032109
Gbrowse : chr2L:9327743-9330033 (+) // 100.0 //
Probeset : 1625365_at
Accessions : protein= NP_609280;, nucleotide= NM_135436;
FlyMine data for FBgn0032109.
VDRC has 2 RNAi stocks for FBgn0032109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head3 00 of 4 0.10Down
Eye5 10 of 4 0.24Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland7 20 of 4 0.33Down
Crop4 30 of 4 0.20Down
Midgut7 20 of 4 0.30Down
Tubule3 00 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart1 00 of 4 0.07Down
Fat body2 00 of 4 0.09Down
Ovary0 00 of 4 0.00Down
Testis273 84 of 411.60Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca1 00 of 4 0.05Down
Adult carcass5 40 of 4 0.20Down
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland5 20 of 4 0.22Down
Larval midgut4 10 of 4 0.21Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body46 213 of 4 2.00None
Larval trachea2 20 of 4 0.10Down
Larval carcass3 10 of 4 0.13Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly23 04 of 4

Looking for CG17005-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime