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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17009-RA through 18771 annotations produced 1 hits



australin (aust):

Annotation Number : CG17009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032104
Gbrowse : chr2L:9250291-9251008 (-) // 100.0 //
Probeset : 1629615_at
Accessions : protein= NP_609278;, nucleotide= NM_135434;
Pathway : 0032133 // chromosome passenger complex // inferred from direct assay
FlyMine data for FBgn0032104.
BioGrid reports that CG17009 interacts with CG3668 CG7928 CG9797 .
VDRC has 2 RNAi stocks for FBgn0032104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.50None
Head1 ± 00 of 4 0.50None
Eye0 ± 00 of 4 0.19None
Thoracicoabdominal ganglion2 ± 10 of 4 0.60None
Salivary gland5 ± 20 of 4 1.44None
Crop5 ± 10 of 4 1.50None
Midgut2 ± 00 of 4 0.70None
Tubule2 ± 00 of 4 0.60Down
Hindgut2 ± 10 of 4 0.60None
Heart1 ± 00 of 4 0.27None
Fat body3 ± 20 of 4 0.80None
Ovary1 ± 00 of 4 0.30None
Testis73 ± 24 of 418.20Up
Male accessory glands1 ± 00 of 4 0.30None
Virgin spermatheca3 ± 00 of 4 0.73None
Mated spermatheca2 ± 10 of 4 0.56None
Adult carcass3 ± 10 of 4 1.00None
Larval CNS0 ± 00 of 4 0.22None
Larval Salivary gland0 ± 00 of 4 0.20None
Larval midgut0 ± 00 of 4 0.22None
Larval tubule1 ± 00 of 4 0.30None
Larval hindgut1 ± 10 of 4 0.48None
Larval fat body20 ± 101 of 4 5.20None
Larval trachea0 ± 00 of 4 0.10None
Larval carcass1 ± 00 of 4 0.30None
S2 cells (growing)1 ± 00 of 4 0.44None
Whole fly4 ± 10 of 4

Looking for CG17009-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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