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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17012-RA through 18771 annotations produced 1 hits


(CG17012):

Annotation Number : CG17012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031406
Gbrowse : chr2L:2254174-2255050 (-) // 100.0 //
Probeset : 1627542_at
Accessions : protein= NP_608662;, nucleotide= NM_134818;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031406.
BDGP gene expression has embryonic in situ data for CG17012: 4 pix of staining in 1 body parts.
Homophila reports that CG17012 is a close match (2e-12) to human gene FSAP;HABP2;HGFAL;PHBP (NP_004123), a gene associated with {Carotid stenosis, susceptibility to} (3);{Venous thromboembolism, susceptibility to}, 188050 (3).
VDRC has 1 RNAi stocks for FBgn0031406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.03Down
Crop2 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut3 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body7 ± 100 of 4 0.06Down
Ovary2 ± 11 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca6280 ± 2514 of 448.53Up
Mated spermatheca6515 ± 2314 of 450.35Up
Adult carcass30 ± 202 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland3 ± 00 of 4 0.02Down
Larval midgut1 ± 10 of 4 0.01Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.02Down
Larval fat body4 ± 30 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly129 ± 314 of 4

Looking for CG17012-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime