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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1702-RA through 18771 annotations produced 1 hits



(CG1702):

Annotation Number : CG1702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031117
Gbrowse : chrX:20339413-20340823 (+) // 100.0 //
Probeset : 1639868_at
Accessions : protein= NP_001162808; /// NP_728347;, nucleotide= NM_001169337; /// NM_167706;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0031117.
BDGP gene expression has embryonic in situ data for CG1702: 15 pix of staining in 3 body parts.
BioGrid reports that CG1702 interacts with CG6022 CG3938 CG4057 .
VDRC has 2 RNAi stocks for FBgn0031117 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 24 of 4 0.10Down
Head140 44 of 4 0.60Down
Eye141 94 of 4 0.56Down
Thoracicoabdominal ganglion45 34 of 4 0.20Down
Salivary gland47 53 of 4 0.19Down
Crop653 104 of 4 2.60Up
Midgut413 74 of 4 1.60Up
Tubule1815 3114 of 4 7.10Up
Hindgut727 214 of 4 2.90Up
Heart375 184 of 4 1.47Up
Fat body386 94 of 4 1.52Up
Ovary262 54 of 4 1.00None
Testis30 14 of 4 0.10Down
Male accessory glands39 34 of 4 0.20Down
Virgin spermatheca318 154 of 4 1.25Up
Mated spermatheca265 134 of 4 1.04None
Adult carcass226 64 of 4 0.90Down
Larval CNS45 24 of 4 0.18Down
Larval Salivary gland75 34 of 4 0.30Down
Larval midgut517 404 of 4 2.03Up
Larval tubule5470 1404 of 421.50Up
Larval hindgut208 94 of 4 0.82Down
Larval fat body118 184 of 4 0.50Down
Larval trachea176 194 of 4 0.69Down
Larval carcass50 44 of 4 0.20Down
S2 cells (growing)86 24 of 4 0.34Down
Whole fly254 84 of 4

Looking for CG1702-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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