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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17027-RA through 18771 annotations produced 1 hits


Annotation Number : CG17027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036553
Gbrowse : chr3L:15973055-15974990 (+) // 100.0 //
Probeset : 1628821_at
Accessions : protein= NP_648823;, nucleotide= NM_140566;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008934 // i
FlyMine data for FBgn0036553.
BDGP gene expression has embryonic in situ data for CG17027: 9 pix of staining in 4 body parts.
VDRC has 4 RNAi stocks for FBgn0036553 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 24 of 4 0.60None
Head109 54 of 4 2.60Up
Eye56 44 of 4 1.37None
Thoracicoabdominal ganglion26 14 of 4 0.60None
Salivary gland12 30 of 4 0.29Down
Crop139 24 of 4 3.40Up
Midgut24 13 of 4 0.60None
Tubule1526 1534 of 436.80Up
Hindgut117 74 of 4 2.80Up
Heart9 02 of 4 0.22Down
Fat body25 242 of 4 0.62None
Ovary0 00 of 4 0.00Down
Testis2 00 of 4 0.10Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca17 13 of 4 0.42None
Mated spermatheca20 14 of 4 0.50None
Adult carcass42 54 of 4 1.00None
Larval CNS1 10 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.08Down
Larval midgut7 21 of 4 0.17Down
Larval tubule3572 624 of 486.20Up
Larval hindgut35 34 of 4 0.86None
Larval fat body3 20 of 4 0.10Down
Larval trachea37 114 of 4 0.90None
Larval carcass106 164 of 4 2.57Up
S2 cells (growing)2 00 of 4 0.05Down
Whole fly41 74 of 4

Looking for CG17027-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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