FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17027-RA through 18771 annotations produced 1 hits

(CG17027):

Annotation Number : CG17027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036553
Gbrowse : chr3L:15973055-15974990 (+) // 100.0 //
Probeset : 1628821_at
Accessions : protein= NP_648823;, nucleotide= NM_140566;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008934 // i
FlyMine data for FBgn0036553.
BDGP gene expression has embryonic in situ data for CG17027: 9 pix of staining in 4 body parts.
VDRC has 4 RNAi stocks for FBgn0036553 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 2	4 of 4	0.60	None
Head	109 ± 5	4 of 4	2.60	Up
Eye	56 ± 4	4 of 4	1.37	None
Thoracicoabdominal ganglion	26 ± 1	4 of 4	0.60	None
Salivary gland	12 ± 3	0 of 4	0.29	Down
Crop	139 ± 2	4 of 4	3.40	Up
Midgut	24 ± 1	3 of 4	0.60	None
Tubule	1526 ± 153	4 of 4	36.80	Up
Hindgut	117 ± 7	4 of 4	2.80	Up
Heart	9 ± 0	2 of 4	0.22	Down
Fat body	25 ± 24	2 of 4	0.62	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	17 ± 1	3 of 4	0.42	None
Mated spermatheca	20 ± 1	4 of 4	0.50	None
Adult carcass	42 ± 5	4 of 4	1.00	None
Larval CNS	1 ± 1	0 of 4	0.05	Down
Larval Salivary gland	3 ± 1	0 of 4	0.08	Down
Larval midgut	7 ± 2	1 of 4	0.17	Down
Larval tubule	3572 ± 62	4 of 4	86.20	Up
Larval hindgut	35 ± 3	4 of 4	0.86	None
Larval fat body	3 ± 2	0 of 4	0.10	Down
Larval trachea	37 ± 11	4 of 4	0.90	None
Larval carcass	106 ± 16	4 of 4	2.57	Up
S2 cells (growing)	2 ± 0	0 of 4	0.05	Down
Whole fly	41 ± 7	4 of 4

Looking for CG17027-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720