FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG17028-RA through 18771 annotations produced 1 hits

(CG17028):

Annotation Number : CG17028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036552
Gbrowse : chr3L:15971642-15972838 (+) // 100.0 //
Probeset : 1624975_at
Accessions : protein= NP_648822;, nucleotide= NM_140565;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0008934 // i
FlyMine data for FBgn0036552.
VDRC has 3 RNAi stocks for FBgn0036552 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	0.20	Down
Head	11 ± 1	3 of 4	0.30	Down
Eye	15 ± 2	4 of 4	0.42	Down
Thoracicoabdominal ganglion	10 ± 1	2 of 4	0.30	Down
Salivary gland	36 ± 5	1 of 4	1.02	None
Crop	18 ± 2	3 of 4	0.50	Down
Midgut	176 ± 5	4 of 4	4.90	Up
Tubule	557 ± 26	4 of 4	15.40	Up
Hindgut	61 ± 1	4 of 4	1.70	Up
Heart	40 ± 4	4 of 4	1.12	None
Fat body	62 ± 4	4 of 4	1.72	Up
Ovary	1 ± 0	0 of 4	0.00	Down
Testis	9 ± 1	4 of 4	0.30	Down
Male accessory glands	4 ± 1	0 of 4	0.10	Down
Virgin spermatheca	26 ± 0	4 of 4	0.72	Down
Mated spermatheca	22 ± 2	4 of 4	0.63	Down
Adult carcass	31 ± 1	3 of 4	0.90	None
Larval CNS	1 ± 1	0 of 4	0.04	Down
Larval Salivary gland	4 ± 1	0 of 4	0.12	Down
Larval midgut	50 ± 3	4 of 4	1.40	Up
Larval tubule	80 ± 3	4 of 4	2.20	Up
Larval hindgut	14 ± 0	4 of 4	0.41	Down
Larval fat body	2 ± 1	0 of 4	0.10	Down
Larval trachea	10 ± 3	3 of 4	0.28	Down
Larval carcass	8 ± 1	0 of 4	0.22	Down
S2 cells (growing)	3 ± 0	0 of 4	0.10	Down
Whole fly	36 ± 2	4 of 4

Looking for CG17028-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720