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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17029-RA through 18771 annotations produced 1 hits



(CG17029):

Annotation Number : CG17029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036551
Gbrowse : chr3L:15970134-15971537 (+) // 100.0 //
Probeset : 1639911_at
Accessions : protein= NP_648821;, nucleotide= NM_140564;
Interpro : 0004437 // inositol or phosphatidylinositol phosphatase activity // inferred from electronic annotation /// 0005515 // p
FlyMine data for FBgn0036551.
BDGP gene expression has embryonic in situ data for CG17029: 10 pix of staining in 3 body parts.
VDRC has 4 RNAi stocks for FBgn0036551 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain351 ± 04 of 4 1.80Up
Head227 ± 74 of 4 1.10None
Eye102 ± 64 of 4 0.51Down
Thoracicoabdominal ganglion432 ± 134 of 4 2.20Up
Salivary gland289 ± 84 of 4 1.44Up
Crop536 ± 104 of 4 2.70Up
Midgut487 ± 124 of 4 2.40Up
Tubule4723 ± 484 of 423.50Up
Hindgut527 ± 204 of 4 2.60Up
Heart197 ± 64 of 4 0.98None
Fat body189 ± 184 of 4 0.94None
Ovary31 ± 14 of 4 0.20Down
Testis21 ± 13 of 4 0.10Down
Male accessory glands226 ± 284 of 4 1.10None
Virgin spermatheca155 ± 74 of 4 0.77None
Mated spermatheca187 ± 104 of 4 0.93None
Adult carcass168 ± 134 of 4 0.80None
Larval CNS101 ± 214 of 4 0.50Down
Larval Salivary gland60 ± 34 of 4 0.30Down
Larval midgut737 ± 824 of 4 3.67Up
Larval tubule3156 ± 1284 of 415.70Up
Larval hindgut453 ± 304 of 4 2.26Up
Larval fat body6 ± 20 of 4 0.00Down
Larval trachea926 ± 1184 of 4 4.61Up
Larval carcass333 ± 304 of 4 1.66Up
S2 cells (growing)53 ± 04 of 4 0.27Down
Whole fly200 ± 154 of 4

Looking for CG17029-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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