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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17030-RA through 18771 annotations produced 1 hits



(CG17030):

Annotation Number : CG17030
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035584
Gbrowse : chr3L:4979980-4980769 (-) // 100.0 //
Probeset : 1626906_at
Accessions : protein= NP_647941;, nucleotide= NM_139684;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0035584.
BDGP gene expression has embryonic in situ data for CG17030: 2 pix of staining in 1 body parts.
Homophila reports that CG17030 is a close match (5e-12) to human gene RAD6A;UBE2A (NP_003327), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG17030 interacts with CG5102 .
VDRC has 3 RNAi stocks for FBgn0035584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 14 of 4 0.30Down
Head4 ± 01 of 4 0.10Down
Eye2 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 02 of 4 0.10Down
Salivary gland15 ± 61 of 4 0.43Down
Crop8 ± 31 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.10Down
Hindgut7 ± 10 of 4 0.20Down
Heart4 ± 11 of 4 0.13Down
Fat body2 ± 10 of 4 0.07Down
Ovary3 ± 00 of 4 0.10Down
Testis522 ± 94 of 414.40Up
Male accessory glands9 ± 01 of 4 0.20Down
Virgin spermatheca5 ± 10 of 4 0.14Down
Mated spermatheca5 ± 11 of 4 0.14Down
Adult carcass6 ± 11 of 4 0.20Down
Larval CNS4 ± 12 of 4 0.13Down
Larval Salivary gland4 ± 21 of 4 0.11Down
Larval midgut4 ± 20 of 4 0.12Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut5 ± 12 of 4 0.16Down
Larval fat body77 ± 314 of 4 2.10None
Larval trachea2 ± 20 of 4 0.07Down
Larval carcass6 ± 21 of 4 0.18Down
S2 cells (growing)3 ± 01 of 4 0.11Down
Whole fly36 ± 24 of 4

Looking for CG17030-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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