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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17034-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:9302479-9326550 (-) // 100.0 //):

Annotation Number : CG17034
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1627239_s_at
Accessions : protein= EC:3.6.3.1, nucleotide=
Interpro : 0006754 // ATP biosynthetic process // inferred from electronic annotation /// 0015914 // phospholipid transport // infe
Homophila reports that CG17034 is a close match (9e-11) to human gene ATP2C1;BCPM;HHD (NP_055197), a gene associated with Hailey-Hailey disease, 169600 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain891 ± 174 of 4 6.40Up
Head409 ± 34 of 4 3.00Up
Eye518 ± 164 of 4 3.75Up
Thoracicoabdominal ganglion740 ± 144 of 4 5.30Up
Salivary gland659 ± 334 of 4 4.77Up
Crop361 ± 104 of 4 2.60Up
Midgut194 ± 64 of 4 1.40Up
Tubule785 ± 384 of 4 5.70Up
Hindgut376 ± 114 of 4 2.70Up
Heart616 ± 154 of 4 4.46Up
Fat body286 ± 434 of 4 2.07Up
Ovary99 ± 54 of 4 0.70Down
Testis29 ± 24 of 4 0.20Down
Male accessory glands395 ± 34 of 4 2.90Up
Virgin spermatheca141 ± 84 of 4 1.02None
Mated spermatheca146 ± 94 of 4 1.06None
Adult carcass249 ± 114 of 4 1.80Up
Larval CNS277 ± 264 of 4 2.01Up
Larval Salivary gland49 ± 34 of 4 0.36Down
Larval midgut126 ± 24 of 4 0.91None
Larval tubule289 ± 94 of 4 2.10Up
Larval hindgut236 ± 104 of 4 1.71Up
Larval fat body33 ± 44 of 4 0.20Down
Larval trachea85 ± 34 of 4 0.62Down
Larval carcass253 ± 94 of 4 1.83Up
S2 cells (growing)64 ± 24 of 4 0.47Down
Whole fly138 ± 114 of 4

Looking for CG17034-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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