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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17041-RA through 18771 annotations produced 1 hits



CG17041 (CG42319):

Annotation Number : CG17041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259219
Gbrowse : chr2R:9149988-9151840 (+) // 99.59 //
Probeset : 1624969_s_at
Accessions : protein= NP_001097301; /// NP_001137648; /// NP_610860; /// NP_610861; /// NP_725274; /// NP_725275;, nucleotide= NM_001103831; /// NM_001144176; /// NM_137016; /// NM_137017; /// NM_137017; /// NM_165977; /// NM_165978;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0259219.
BioGrid reports that CG17041 interacts with CG32156 CG3557 .
VDRC has 6 RNAi stocks for FBgn0259219 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 ± 44 of 4 0.10Down
Head757 ± 364 of 4 2.20Up
Eye358 ± 414 of 4 1.03None
Thoracicoabdominal ganglion65 ± 44 of 4 0.20Down
Salivary gland17 ± 40 of 4 0.05Down
Crop1090 ± 204 of 4 3.10Up
Midgut15 ± 30 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut246 ± 134 of 4 0.70Down
Heart2048 ± 1384 of 4 5.88Up
Fat body58 ± 244 of 4 0.17Down
Ovary3 ± 10 of 4 0.00Down
Testis4 ± 00 of 4 0.00Down
Male accessory glands19 ± 31 of 4 0.10Down
Virgin spermatheca18 ± 20 of 4 0.05Down
Mated spermatheca15 ± 30 of 4 0.04Down
Adult carcass1151 ± 874 of 4 3.30Up
Larval CNS8 ± 00 of 4 0.02Down
Larval Salivary gland10 ± 30 of 4 0.03Down
Larval midgut25 ± 14 of 4 0.07Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut100 ± 134 of 4 0.29Down
Larval fat body28 ± 21 of 4 0.10Down
Larval trachea34 ± 402 of 4 0.10Down
Larval carcass644 ± 1134 of 4 1.85None
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly348 ± 214 of 4

Looking for CG17041-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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