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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17045-RA through 18771 annotations produced 1 hits



yellow-e3 (yellow-e3):

Annotation Number : CG17045
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038150
Gbrowse : chr3R:9229142-9230590 (-) // 100.0 //
Probeset : 1630540_at
Accessions : protein= NP_650288;, nucleotide= NM_142031;
FlyMine data for FBgn0038150.
BDGP gene expression has embryonic in situ data for yellow-e3: 28 pix of staining in 22 body parts.
BioGrid reports that CG17045 interacts with CG31045 .
VDRC has 3 RNAi stocks for FBgn0038150 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.40None
Head4 ± 10 of 4 0.80None
Eye1 ± 00 of 4 0.29Down
Thoracicoabdominal ganglion6 ± 20 of 4 1.40None
Salivary gland12 ± 40 of 4 2.39None
Crop7 ± 10 of 4 1.40None
Midgut3 ± 00 of 4 0.60None
Tubule3 ± 00 of 4 0.60Down
Hindgut2 ± 10 of 4 0.50None
Heart1 ± 00 of 4 0.34Down
Fat body3 ± 20 of 4 0.61None
Ovary2 ± 00 of 4 0.60None
Testis2 ± 00 of 4 0.50None
Male accessory glands6 ± 00 of 4 1.30None
Virgin spermatheca9 ± 10 of 4 1.84Up
Mated spermatheca8 ± 20 of 4 1.66None
Adult carcass8 ± 30 of 4 1.80None
Larval CNS14 ± 42 of 4 2.94Up
Larval Salivary gland6 ± 20 of 4 1.29None
Larval midgut7 ± 10 of 4 1.57None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.32Down
Larval fat body8 ± 21 of 4 1.70None
Larval trachea0 ± 00 of 4 0.09Down
Larval carcass4 ± 10 of 4 0.93None
S2 cells (growing)7 ± 10 of 4 1.47None
Whole fly5 ± 10 of 4

Looking for CG17045-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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