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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17051-RA through 18771 annotations produced 1 hits



dodo (dod):

Annotation Number : CG17051
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015379
Gbrowse : chrX:21216406-21218164 (+) // 100.0 //
Probeset : 1636396_at
Accessions : protein= NP_523428;, nucleotide= NM_078704;
Pathway : 0005634 // nucleus // inferred from direct assay
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0015379.
BioGrid reports that CG17051 interacts with CG4841 CG17666 CG2047 CG5052 CG7001 CG8933 CG2845 .
VDRC has 3 RNAi stocks for FBgn0015379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 44 of 4 2.60Up
Head33 ± 44 of 4 1.30None
Eye40 ± 34 of 4 1.50Up
Thoracicoabdominal ganglion82 ± 34 of 4 3.10Up
Salivary gland24 ± 31 of 4 0.89None
Crop25 ± 24 of 4 0.90None
Midgut17 ± 14 of 4 0.70Down
Tubule21 ± 13 of 4 0.80Down
Hindgut25 ± 34 of 4 0.90None
Heart21 ± 24 of 4 0.82None
Fat body21 ± 34 of 4 0.78Down
Ovary43 ± 14 of 4 1.60Up
Testis4 ± 10 of 4 0.20Down
Male accessory glands10 ± 40 of 4 0.40Down
Virgin spermatheca19 ± 13 of 4 0.71Down
Mated spermatheca18 ± 04 of 4 0.70Down
Adult carcass30 ± 43 of 4 1.10None
Larval CNS72 ± 84 of 4 2.70Up
Larval Salivary gland32 ± 23 of 4 1.20None
Larval midgut15 ± 13 of 4 0.57Down
Larval tubule15 ± 21 of 4 0.60Down
Larval hindgut20 ± 14 of 4 0.74Down
Larval fat body9 ± 20 of 4 0.40Down
Larval trachea43 ± 44 of 4 1.63Up
Larval carcass26 ± 24 of 4 0.98None
S2 cells (growing)37 ± 14 of 4 1.40Up
Whole fly26 ± 14 of 4

Looking for CG17051-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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