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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17060-RA through 18771 annotations produced 1 hits



Rab-protein 10 (Rab10):

Annotation Number : CG17060
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015789
Gbrowse : chrX:20122450-20125717 (+) // 100.0 //
Probeset : 1638864_at
Accessions : protein= NP_523419;, nucleotide= NM_078695;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0015789.
BDGP gene expression has embryonic in situ data for Rab10: 4 pix of staining in 1 body parts.
Homophila reports that CG17060 is a close match (6e-13) to human gene RRAS2;TC21 (NP_001096139), a gene associated with Ovarian carcinoma (3).
TRiP has 1 RNAi stocks for FBgn0015789 available for purchase.
VDRC has 4 RNAi stocks for FBgn0015789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain304 ± 24 of 4 0.90None
Head304 ± 214 of 4 0.90None
Eye441 ± 124 of 4 1.24None
Thoracicoabdominal ganglion285 ± 84 of 4 0.80None
Salivary gland751 ± 164 of 4 2.11Up
Crop460 ± 184 of 4 1.30Up
Midgut603 ± 144 of 4 1.70Up
Tubule420 ± 184 of 4 1.20Up
Hindgut604 ± 264 of 4 1.70Up
Heart589 ± 104 of 4 1.65Up
Fat body523 ± 614 of 4 1.47Up
Ovary559 ± 134 of 4 1.60Up
Testis70 ± 14 of 4 0.20Down
Male accessory glands455 ± 194 of 4 1.30Up
Virgin spermatheca352 ± 414 of 4 0.99None
Mated spermatheca430 ± 274 of 4 1.21None
Adult carcass460 ± 304 of 4 1.30None
Larval CNS434 ± 254 of 4 1.22None
Larval Salivary gland481 ± 124 of 4 1.35Up
Larval midgut896 ± 374 of 4 2.52Up
Larval tubule472 ± 104 of 4 1.30Up
Larval hindgut853 ± 254 of 4 2.40Up
Larval fat body307 ± 154 of 4 0.90None
Larval trachea466 ± 274 of 4 1.31Up
Larval carcass466 ± 64 of 4 1.31Up
S2 cells (growing)753 ± 124 of 4 2.12Up
Whole fly356 ± 304 of 4

Looking for CG17060-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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