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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17063-RA through 18771 annotations produced 1 hits



pas related protein 6 (inx6):

Annotation Number : CG17063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027107
Gbrowse : chrX:20139006-20140526 (-) // 100.0 //
Probeset : 1627291_at
Accessions : protein= NP_572374;, nucleotide= NM_132146;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005921 // gap junction // inferred from direct as
Interpro : 0005243 // gap junction channel activity // inferred from sequence or structural similarity /// 0005243 // gap junction
FlyMine data for FBgn0027107.
TRiP has 1 RNAi stocks for FBgn0027107 available for purchase.
VDRC has 4 RNAi stocks for FBgn0027107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30Down
Head1 ± 00 of 4 0.40None
Eye1 ± 00 of 4 0.70None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland4 ± 20 of 4 1.69None
Crop1 ± 00 of 4 0.60None
Midgut2 ± 00 of 4 0.90None
Tubule2 ± 00 of 4 1.10None
Hindgut3 ± 10 of 4 1.30None
Heart0 ± 00 of 4 0.34Down
Fat body1 ± 00 of 4 0.42None
Ovary0 ± 00 of 4 0.30Down
Testis25 ± 14 of 410.70Up
Male accessory glands1 ± 00 of 4 0.70None
Virgin spermatheca1 ± 00 of 4 0.64None
Mated spermatheca2 ± 10 of 4 0.95None
Adult carcass8 ± 40 of 4 3.60None
Larval CNS0 ± 00 of 4 0.20Down
Larval Salivary gland4 ± 10 of 4 1.67None
Larval midgut1 ± 00 of 4 0.73None
Larval tubule4 ± 10 of 4 1.90None
Larval hindgut2 ± 10 of 4 1.01None
Larval fat body12 ± 20 of 4 4.90Up
Larval trachea1 ± 10 of 4 0.77None
Larval carcass1 ± 00 of 4 0.53None
S2 cells (growing)1 ± 00 of 4 0.42None
Whole fly2 ± 00 of 4

Looking for CG17063-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime