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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17068-RA through 18771 annotations produced 1 hits



(CG17068):

Annotation Number : CG17068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031098
Gbrowse : chrX:20119376-20122516 (-) // 100.0 //
Probeset : 1626300_at
Accessions : protein= NP_608379;, nucleotide= NM_134535;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0031098.
BDGP gene expression has embryonic in situ data for CG17068: 5 pix of staining in 1 body parts.
BioGrid reports that CG17068 interacts with CG5640 .
VDRC has 2 RNAi stocks for FBgn0031098 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain118 ± 84 of 4 1.20None
Head70 ± 64 of 4 0.70Down
Eye67 ± 44 of 4 0.66Down
Thoracicoabdominal ganglion102 ± 14 of 4 1.00None
Salivary gland75 ± 44 of 4 0.74Down
Crop66 ± 34 of 4 0.70Down
Midgut73 ± 24 of 4 0.70Down
Tubule101 ± 24 of 4 1.00None
Hindgut62 ± 34 of 4 0.60Down
Heart63 ± 24 of 4 0.63Down
Fat body59 ± 54 of 4 0.59Down
Ovary231 ± 94 of 4 2.30Up
Testis19 ± 04 of 4 0.20Down
Male accessory glands105 ± 34 of 4 1.00None
Virgin spermatheca103 ± 34 of 4 1.02None
Mated spermatheca105 ± 24 of 4 1.03None
Adult carcass44 ± 14 of 4 0.40Down
Larval CNS208 ± 154 of 4 2.05Up
Larval Salivary gland117 ± 64 of 4 1.15None
Larval midgut52 ± 24 of 4 0.51Down
Larval tubule92 ± 34 of 4 0.90None
Larval hindgut99 ± 24 of 4 0.97None
Larval fat body45 ± 54 of 4 0.40Down
Larval trachea158 ± 244 of 4 1.56Up
Larval carcass94 ± 34 of 4 0.93None
S2 cells (growing)143 ± 34 of 4 1.41Up
Whole fly101 ± 64 of 4

Looking for CG17068-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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