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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG17077-RB through 18771 annotations produced 1 hits

pointed (pnt):

Annotation Number : CG17077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003118
Gbrowse : chr3R:19116825-19171884 (-) // 100.0 //
Probeset : 1630010_a_at
Accessions : protein= NP_524461; /// NP_732857; /// NP_732858;, nucleotide= NM_079737; /// NM_170070; /// NM_170651;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0006916 // anti-apoptosis // inferred from genetic interaction /// 000
FlyMine data for FBgn0003118.
Homophila reports that CG17077 is a close match (4e-12) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
BioGrid reports that CG17077 interacts with CG8189 CG3166 CG3166 CG3166 CG3166 CG3954 CG12676 CG2275 CG2275 CG2845 CG2845 CG2845 CG5529 CG4209 CG4654 CG15793 CG6376 CG3936 CG3936 CG9842 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG9375 CG5123 CG1945 CG17228 CG18085 CG18497 CG1395 CG31774 CG6817 CG5772 .
TRiP has 2 RNAi stocks for FBgn0003118 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003118 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 1.20None
Head21 24 of 4 1.30None
Eye20 24 of 4 1.25None
Thoracicoabdominal ganglion21 04 of 4 1.30None
Salivary gland6 20 of 4 0.38Down
Crop59 34 of 4 3.60Up
Midgut42 24 of 4 2.60Up
Tubule24 33 of 4 1.50Up
Hindgut15 04 of 4 0.90None
Heart75 74 of 4 4.56Up
Fat body14 64 of 4 0.90None
Ovary13 14 of 4 0.80None
Testis4 10 of 4 0.30Down
Male accessory glands17 13 of 4 1.10None
Virgin spermatheca9 02 of 4 0.60None
Mated spermatheca10 32 of 4 0.63None
Adult carcass18 04 of 4 1.10None
Larval CNS68 104 of 4 4.17Up
Larval Salivary gland4 20 of 4 0.29Down
Larval midgut47 34 of 4 2.88Up
Larval tubule23 14 of 4 1.40None
Larval hindgut26 44 of 4 1.62None
Larval fat body18 43 of 4 1.10None
Larval trachea43 64 of 4 2.63Up
Larval carcass21 14 of 4 1.33None
S2 cells (growing)1108 324 of 467.26Up
Whole fly16 24 of 4

Looking for CG17077-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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