FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1709-RC through 18771 annotations produced 1 hits

neuron-specific V[[0]] subunit a1 (Vha100-1):

Annotation Number : CG1709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028671
Gbrowse : chr3R:24956771-24963704 (+) // 100.0 //
Probeset : 1632395_s_at
Accessions : protein= NP_001163768; /// NP_001163769; /// NP_651672; /// NP_733270; /// NP_733271; /// NP_733272; /// NP_733273; /// NP_733274; /// NP_733275; /// NP_733276;, nucleotide= NM_001170297; /// NM_001170298; /// NM_143415; /// NM_170391; /// NM_170392; /// NM_170393; /// NM_170394; /// NM_170395; /// NM_170396; /// NM_170397;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0033177 // proton-transporting two-sector ATPase compl
FlyMine data for FBgn0028671.
BDGP gene expression has embryonic in situ data for Vha100-1: 10 pix of staining in 7 body parts.
Homophila reports that CG1709 is a close match (7e-73) to human gene OC116;OPTB1;TCIRG1;TIRC7 (NP_006044), a gene associated with Osteopetrosis, recessive 1, 259700 (3).
BioGrid reports that CG1709 interacts with CG9083 .
TRiP has 1 RNAi stocks for FBgn0028671 available for purchase.
VDRC has 3 RNAi stocks for FBgn0028671 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1039 ± 13	4 of 4	4.30	Up
Head	510 ± 41	4 of 4	2.10	Up
Eye	517 ± 12	4 of 4	2.13	Up
Thoracicoabdominal ganglion	1053 ± 15	4 of 4	4.30	Up
Salivary gland	630 ± 16	4 of 4	2.60	Up
Crop	325 ± 11	4 of 4	1.30	Up
Midgut	176 ± 3	4 of 4	0.70	Down
Tubule	204 ± 7	4 of 4	0.80	Down
Hindgut	283 ± 2	4 of 4	1.20	Up
Heart	669 ± 28	4 of 4	2.76	Up
Fat body	370 ± 21	4 of 4	1.53	Up
Ovary	265 ± 12	4 of 4	1.10	None
Testis	156 ± 2	4 of 4	0.60	Down
Male accessory glands	498 ± 29	4 of 4	2.10	Up
Virgin spermatheca	202 ± 16	4 of 4	0.83	None
Mated spermatheca	159 ± 9	4 of 4	0.66	Down
Adult carcass	385 ± 34	4 of 4	1.60	Up
Larval CNS	522 ± 41	4 of 4	2.15	Up
Larval Salivary gland	409 ± 25	4 of 4	1.69	Up
Larval midgut	261 ± 32	4 of 4	1.08	None
Larval tubule	383 ± 9	4 of 4	1.60	Up
Larval hindgut	270 ± 7	4 of 4	1.11	None
Larval fat body	588 ± 46	4 of 4	2.40	Up
Larval trachea	292 ± 22	4 of 4	1.21	Up
Larval carcass	288 ± 27	4 of 4	1.19	None
S2 cells (growing)	871 ± 15	4 of 4	3.59	Up
Whole fly	242 ± 9	4 of 4

Looking for CG1709-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720