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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17111-RA through 18771 annotations produced 1 hits



(CG17111):

Annotation Number : CG17111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039048
Gbrowse : chr3R:18888496-18891975 (-) // 100.0 //
Probeset : 1625891_at
Accessions : protein= NP_651119;, nucleotide= NM_142862;
FlyMine data for FBgn0039048.
VDRC has 2 RNAi stocks for FBgn0039048 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 04 of 4 0.40Down
Head180 104 of 4 4.30Up
Eye216 134 of 4 5.21Up
Thoracicoabdominal ganglion35 04 of 4 0.90Down
Salivary gland201 64 of 4 4.85Up
Crop546 114 of 413.10Up
Midgut18 24 of 4 0.40Down
Tubule47 64 of 4 1.10None
Hindgut307 24 of 4 7.40Up
Heart33 14 of 4 0.80Down
Fat body40 54 of 4 0.98None
Ovary5 10 of 4 0.10Down
Testis16 24 of 4 0.40Down
Male accessory glands27 53 of 4 0.60None
Virgin spermatheca71 24 of 4 1.71Up
Mated spermatheca99 84 of 4 2.38Up
Adult carcass123 84 of 4 3.00Up
Larval CNS4 20 of 4 0.12Down
Larval Salivary gland145 74 of 4 3.49Up
Larval midgut8 40 of 4 0.21Down
Larval tubule4 11 of 4 0.10Down
Larval hindgut17 22 of 4 0.42Down
Larval fat body4 20 of 4 0.10Down
Larval trachea219 244 of 4 5.29Up
Larval carcass46 84 of 4 1.12None
S2 cells (growing)2 00 of 4 0.05Down
Whole fly41 14 of 4

Looking for CG17111-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime