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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1712-RA through 18771 annotations produced 1 hits



Gustatory receptor 43a (Gr43a):

Annotation Number : CG1712
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041243
Gbrowse : chr2R:3278526-3280654 (-) // 100.0 //
Probeset : 1629589_at
Accessions : protein= NP_001036531; /// NP_523650;, nucleotide= NM_001043066; /// NM_078926;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0041243.
VDRC has 2 RNAi stocks for FBgn0041243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 03 of 4 3.00None
Head10 10 of 4 3.80Up
Eye3 20 of 4 1.14None
Thoracicoabdominal ganglion7 10 of 4 2.80Up
Salivary gland8 51 of 4 2.88None
Crop5 10 of 4 2.00None
Midgut8 21 of 4 3.10None
Tubule5 10 of 4 1.80Up
Hindgut6 11 of 4 2.50None
Heart5 10 of 4 1.97None
Fat body10 20 of 4 3.61Up
Ovary2 10 of 4 0.80None
Testis5 00 of 4 1.90None
Male accessory glands9 20 of 4 3.40Up
Virgin spermatheca2 10 of 4 0.81None
Mated spermatheca3 00 of 4 1.27None
Adult carcass2 00 of 4 0.80None
Larval CNS5 01 of 4 1.95None
Larval Salivary gland7 20 of 4 2.48None
Larval midgut7 10 of 4 2.50None
Larval tubule5 10 of 4 2.10None
Larval hindgut6 10 of 4 2.23None
Larval fat body9 10 of 4 3.40Up
Larval trachea4 30 of 4 1.60None
Larval carcass8 20 of 4 2.88None
S2 cells (growing)6 00 of 4 2.16None
Whole fly2 10 of 4

Looking for CG1712-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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