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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17121-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:18870387-18873910 (-) // 100.0 //):

Annotation Number : CG17121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1635175_at
Accessions : protein= EC:1.1.1.-, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
Homophila reports that CG17121 is a close match (2e-13) to human gene HSD11;HSD11B1;HSD11L (NP_861420), a gene associated with Cortisone reductase deficiency, 604931 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 0.50Down
Head190 104 of 4 2.50Up
Eye309 154 of 4 4.14Up
Thoracicoabdominal ganglion45 44 of 4 0.60Down
Salivary gland3003 924 of 440.19Up
Crop1019 324 of 413.60Up
Midgut26 14 of 4 0.40Down
Tubule683 454 of 4 9.10Up
Hindgut533 164 of 4 7.10Up
Heart18 04 of 4 0.24Down
Fat body26 34 of 4 0.35Down
Ovary27 14 of 4 0.40Down
Testis51 34 of 4 0.70Down
Male accessory glands430 264 of 4 5.80Up
Virgin spermatheca52 34 of 4 0.71Down
Mated spermatheca66 34 of 4 0.89None
Adult carcass169 114 of 4 2.30Up
Larval CNS41 34 of 4 0.56Down
Larval Salivary gland483 544 of 4 6.47Up
Larval midgut42 64 of 4 0.57Down
Larval tubule482 194 of 4 6.50Up
Larval hindgut187 364 of 4 2.51None
Larval fat body7 21 of 4 0.10Down
Larval trachea592 1454 of 4 7.93Up
Larval carcass258 354 of 4 3.46Up
S2 cells (growing)8 11 of 4 0.11Down
Whole fly74 34 of 4

Looking for CG17121-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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