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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17134-RA through 18771 annotations produced 1 hits



(CG17134):

Annotation Number : CG17134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032304
Gbrowse : chr2L:10820709-10821968 (+) // 100.0 //
Probeset : 1624590_at
Accessions : protein= NP_609458;, nucleotide= NM_135614;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0032304.
BDGP gene expression has embryonic in situ data for CG17134: 4 pix of staining in 1 body parts.
Homophila reports that CG17134 is a close match (2e-67) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
BioGrid reports that CG17134 interacts with CG6054 CG8770 .
VDRC has 3 RNAi stocks for FBgn0032304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 02 of 4 0.90None
Head7 ± 12 of 4 1.20None
Eye5 ± 20 of 4 1.03None
Thoracicoabdominal ganglion8 ± 13 of 4 1.50None
Salivary gland10 ± 21 of 4 1.80None
Crop5 ± 00 of 4 0.90None
Midgut12 ± 22 of 4 2.10None
Tubule6 ± 01 of 4 1.20None
Hindgut6 ± 11 of 4 1.20None
Heart3 ± 10 of 4 0.59None
Fat body7 ± 10 of 4 1.26None
Ovary4 ± 01 of 4 0.80None
Testis6 ± 02 of 4 1.10None
Male accessory glands7 ± 20 of 4 1.20None
Virgin spermatheca47 ± 214 of 4 8.27None
Mated spermatheca45 ± 204 of 4 7.85None
Adult carcass7 ± 31 of 4 1.30None
Larval CNS4 ± 13 of 4 0.82None
Larval Salivary gland5255 ± 2594 of 4909.95Up
Larval midgut14 ± 20 of 4 2.55Up
Larval tubule15 ± 24 of 4 2.60Up
Larval hindgut3 ± 01 of 4 0.61None
Larval fat body5 ± 10 of 4 1.00None
Larval trachea11 ± 133 of 4 2.01None
Larval carcass7 ± 13 of 4 1.25None
S2 cells (growing)8 ± 13 of 4 1.45None
Whole fly5 ± 11 of 4

Looking for CG17134-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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