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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17141-RA through 18771 annotations produced 1 hits



(CG17141):

Annotation Number : CG17141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039020
Gbrowse : chr3R:18571785-18573241 (-) // 100.0 //
Probeset : 1633510_at
Accessions : protein= NP_651094;, nucleotide= NM_142837;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0039020.
BioGrid reports that CG17141 interacts with CG9102 CG17666 .
VDRC has 1 RNAi stocks for FBgn0039020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.70None
Head12 ± 14 of 4 0.70Down
Eye20 ± 24 of 4 1.09None
Thoracicoabdominal ganglion18 ± 14 of 4 1.00None
Salivary gland31 ± 33 of 4 1.68Up
Crop19 ± 14 of 4 1.10None
Midgut19 ± 14 of 4 1.00None
Tubule15 ± 13 of 4 0.80Down
Hindgut18 ± 14 of 4 1.00None
Heart14 ± 14 of 4 0.76None
Fat body15 ± 54 of 4 0.85None
Ovary27 ± 14 of 4 1.50Up
Testis14 ± 14 of 4 0.80None
Male accessory glands22 ± 33 of 4 1.20None
Virgin spermatheca23 ± 14 of 4 1.26None
Mated spermatheca24 ± 24 of 4 1.31None
Adult carcass12 ± 10 of 4 0.70None
Larval CNS23 ± 34 of 4 1.25None
Larval Salivary gland26 ± 34 of 4 1.42None
Larval midgut9 ± 22 of 4 0.51Down
Larval tubule15 ± 24 of 4 0.90None
Larval hindgut14 ± 04 of 4 0.80None
Larval fat body17 ± 23 of 4 1.00None
Larval trachea18 ± 34 of 4 1.00None
Larval carcass14 ± 13 of 4 0.79None
S2 cells (growing)10 ± 03 of 4 0.57Down
Whole fly18 ± 24 of 4

Looking for CG17141-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime