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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17142-RA through 18771 annotations produced 1 hits



pyrexia (pyx):

Annotation Number : CG17142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035113
Gbrowse : chr3L:217946-223069 (-) // 100.0 //
Probeset : 1623586_a_at
Accessions : protein= NP_612015; /// NP_728501;, nucleotide= NM_138171; /// NM_167813;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred by curator //
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005261 // cation channel activity // inferre
FlyMine data for FBgn0035113.
Homophila reports that CG17142 is a close match (4e-11) to human gene ESPN (NP_113663), a gene associated with Deafness, autosomal recessive 36, 609006 (3);Deafness, neurosensory, without vestibular involvement, autosomal dominant (3).
TRiP has 1 RNAi stocks for FBgn0035113 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035113 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 1.90Up
Head13 ± 24 of 4 2.10None
Eye15 ± 14 of 4 2.39Up
Thoracicoabdominal ganglion22 ± 14 of 4 3.50Up
Salivary gland16 ± 11 of 4 2.48Up
Crop9 ± 02 of 4 1.50Up
Midgut8 ± 10 of 4 1.40None
Tubule4 ± 00 of 4 0.70None
Hindgut20 ± 14 of 4 3.20Up
Heart46 ± 34 of 4 7.05Up
Fat body40 ± 54 of 4 6.23Up
Ovary2 ± 00 of 4 0.40Down
Testis4 ± 10 of 4 0.70None
Male accessory glands10 ± 20 of 4 1.70None
Virgin spermatheca111 ± 104 of 417.06Up
Mated spermatheca89 ± 114 of 413.71Up
Adult carcass28 ± 13 of 4 4.40Up
Larval CNS11 ± 14 of 4 1.75Up
Larval Salivary gland4 ± 00 of 4 0.70None
Larval midgut7 ± 20 of 4 1.13None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut21 ± 14 of 4 3.26Up
Larval fat body19 ± 44 of 4 3.00Up
Larval trachea5 ± 31 of 4 0.81None
Larval carcass6 ± 00 of 4 0.95None
S2 cells (growing)8 ± 11 of 4 1.32None
Whole fly6 ± 00 of 4

Looking for CG17142-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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