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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17154-RA through 18771 annotations produced 1 hits



(CG17154):

Annotation Number : CG17154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036246
Gbrowse : chr3L:12081742-12082172 (+) // 100.0 //
Probeset : 1624456_at
Accessions : protein= NP_648544;, nucleotide= NM_140287;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036246.
BioGrid reports that CG17154 interacts with CG2017 CG8359 CG8965 .
VDRC has 2 RNAi stocks for FBgn0036246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye1 00 of 4 0.04Down
Thoracicoabdominal ganglion4 21 of 4 0.10Down
Salivary gland8 20 of 4 0.15Down
Crop7 10 of 4 0.10Down
Midgut2 00 of 4 0.00Down
Tubule6 00 of 4 0.10Down
Hindgut7 10 of 4 0.10Down
Heart3 10 of 4 0.07Down
Fat body8 11 of 4 0.15Down
Ovary3 10 of 4 0.10Down
Testis637 244 of 412.10Up
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca3 00 of 4 0.07Down
Mated spermatheca6 10 of 4 0.12Down
Adult carcass10 30 of 4 0.20Down
Larval CNS1 10 of 4 0.04Down
Larval Salivary gland8 20 of 4 0.15Down
Larval midgut2 00 of 4 0.05Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut9 12 of 4 0.18Down
Larval fat body50 194 of 4 1.00None
Larval trachea4 70 of 4 0.08Down
Larval carcass7 21 of 4 0.14Down
S2 cells (growing)7 10 of 4 0.13Down
Whole fly52 34 of 4

Looking for CG17154-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime