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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17168-RA through 18771 annotations produced 1 hits



(CG17168):

Annotation Number : CG17168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039943
Gbrowse : chrXHet:61584-63395 (+) // 100.0 //
Probeset : 1639801_at
Accessions : protein= NP_001015254;, nucleotide= NM_001015254;
Interpro : 0004864 // phosphoprotein phosphatase inhibitor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0039943.
BDGP gene expression has embryonic in situ data for CG17168: 8 pix of staining in 1 body parts.
BioGrid reports that CG17168 interacts with CG1856 CG5303 .
VDRC has 1 RNAi stocks for FBgn0039943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 ± 104 of 4 1.60Up
Head220 ± 64 of 4 0.90Down
Eye425 ± 364 of 4 1.71Up
Thoracicoabdominal ganglion324 ± 24 of 4 1.30Up
Salivary gland318 ± 44 of 4 1.28Up
Crop255 ± 104 of 4 1.00None
Midgut230 ± 44 of 4 0.90None
Tubule411 ± 64 of 4 1.70Up
Hindgut275 ± 44 of 4 1.10Up
Heart123 ± 34 of 4 0.50Down
Fat body106 ± 114 of 4 0.43Down
Ovary585 ± 24 of 4 2.30Up
Testis54 ± 34 of 4 0.20Down
Male accessory glands197 ± 34 of 4 0.80Down
Virgin spermatheca230 ± 64 of 4 0.92None
Mated spermatheca237 ± 54 of 4 0.95None
Adult carcass152 ± 44 of 4 0.60Down
Larval CNS349 ± 114 of 4 1.40Up
Larval Salivary gland239 ± 44 of 4 0.96None
Larval midgut169 ± 64 of 4 0.68Down
Larval tubule295 ± 14 of 4 1.20Up
Larval hindgut221 ± 54 of 4 0.89Down
Larval fat body182 ± 114 of 4 0.70Down
Larval trachea260 ± 144 of 4 1.05None
Larval carcass191 ± 74 of 4 0.77Down
S2 cells (growing)250 ± 64 of 4 1.01None
Whole fly249 ± 64 of 4

Looking for CG17168-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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