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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17174-RA through 18771 annotations produced 1 hits



adenylyl cyclase (ACXB):

Annotation Number : CG17174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040509
Gbrowse : chr2L:12916813-12921014 (+) // 100.0 //
Probeset : 1640621_at
Accessions : protein= NP_620474;, nucleotide= NM_138989;
Pathway : 0016021 // integral to membrane // not recorded
Interpro : 0004016 // adenylate cyclase activity // not recorded /// 0004016 // adenylate cyclase activity // inferred from sequenc
FlyMine data for FBgn0040509.
Homophila reports that CG17174 is a close match (6e-16) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
VDRC has 2 RNAi stocks for FBgn0040509 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 03 of 4 0.80None
Head2 ± 00 of 4 0.20Down
Eye1 ± 00 of 4 0.18Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland4 ± 10 of 4 0.48None
Crop2 ± 00 of 4 0.30Down
Midgut2 ± 10 of 4 0.30Down
Tubule6 ± 00 of 4 0.70Down
Hindgut3 ± 00 of 4 0.30Down
Heart2 ± 10 of 4 0.30Down
Fat body13 ± 50 of 4 1.36None
Ovary0 ± 00 of 4 0.10Down
Testis156 ± 34 of 415.90Up
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca7 ± 10 of 4 0.71None
Mated spermatheca6 ± 20 of 4 0.63None
Adult carcass8 ± 20 of 4 0.90None
Larval CNS5 ± 11 of 4 0.53Down
Larval Salivary gland2 ± 10 of 4 0.27Down
Larval midgut5 ± 10 of 4 0.56Down
Larval tubule3 ± 10 of 4 0.40Down
Larval hindgut3 ± 20 of 4 0.39None
Larval fat body31 ± 143 of 4 3.30None
Larval trachea1 ± 00 of 4 0.16Down
Larval carcass5 ± 10 of 4 0.56None
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly9 ± 03 of 4

Looking for CG17174-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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