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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17176-RA through 18771 annotations produced 1 hits



adenylyl cyclase (ACXA):

Annotation Number : CG17176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040510
Gbrowse : chr2L:12921090-12925453 (+) // 100.0 //
Probeset : 1632969_at
Accessions : protein= NP_620475;, nucleotide= NM_138990;
Pathway : 0016021 // integral to membrane // not recorded
Interpro : 0004016 // adenylate cyclase activity // not recorded /// 0004016 // adenylate cyclase activity // inferred from sequenc
FlyMine data for FBgn0040510.
Homophila reports that CG17176 is a close match (1e-16) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
BioGrid reports that CG17176 interacts with CG5016 CG3731 .
VDRC has 3 RNAi stocks for FBgn0040510 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.07Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 20 of 4 0.16Down
Crop2 10 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut2 10 of 4 0.10Down
Heart2 10 of 4 0.10Down
Fat body2 00 of 4 0.09Down
Ovary0 00 of 4 0.00Down
Testis541 244 of 420.10Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.06Down
Mated spermatheca2 10 of 4 0.10Down
Adult carcass3 10 of 4 0.10Down
Larval CNS0 10 of 4 0.03Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut1 00 of 4 0.05Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.05Down
Larval fat body91 454 of 4 3.40None
Larval trachea2 30 of 4 0.08Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)0 00 of 4 0.03Down
Whole fly26 44 of 4

Looking for CG17176-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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