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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17183-RA through 18771 annotations produced 1 hits



Mediator complex subunit 30 (MED30):

Annotation Number : CG17183
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035149
Gbrowse : chr3L:652980-654198 (-) // 100.0 //
Probeset : 1625855_at
Accessions : protein= NP_612046;, nucleotide= NM_138202;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016455 // RNA polymerase II transcription mediator
FlyMine data for FBgn0035149.
BDGP gene expression has embryonic in situ data for Trap25: 4 pix of staining in 1 body parts.
BioGrid reports that CG17183 interacts with CG4960 CG7957 CG9473 CG18780 .
TRiP has 2 RNAi stocks for FBgn0035149 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035149 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 44 of 4 1.00None
Head45 ± 44 of 4 0.50Down
Eye62 ± 74 of 4 0.73None
Thoracicoabdominal ganglion73 ± 54 of 4 0.90None
Salivary gland104 ± 124 of 4 1.22None
Crop80 ± 34 of 4 0.90None
Midgut52 ± 74 of 4 0.60Down
Tubule60 ± 34 of 4 0.70Down
Hindgut57 ± 44 of 4 0.70Down
Heart43 ± 14 of 4 0.50Down
Fat body35 ± 14 of 4 0.42Down
Ovary159 ± 34 of 4 1.90Up
Testis172 ± 74 of 4 2.00Up
Male accessory glands68 ± 24 of 4 0.80None
Virgin spermatheca39 ± 14 of 4 0.46Down
Mated spermatheca42 ± 24 of 4 0.50Down
Adult carcass38 ± 44 of 4 0.50Down
Larval CNS143 ± 54 of 4 1.67Up
Larval Salivary gland127 ± 74 of 4 1.49Up
Larval midgut35 ± 24 of 4 0.41Down
Larval tubule65 ± 34 of 4 0.80Down
Larval hindgut48 ± 34 of 4 0.56Down
Larval fat body56 ± 104 of 4 0.70None
Larval trachea87 ± 84 of 4 1.02None
Larval carcass47 ± 34 of 4 0.56Down
S2 cells (growing)284 ± 64 of 4 3.32Up
Whole fly85 ± 64 of 4

Looking for CG17183-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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