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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17187-RA through 18771 annotations produced 1 hits



(CG17187):

Annotation Number : CG17187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037882
Gbrowse : chr3R:7056338-7057578 (-) // 100.0 //
Probeset : 1625165_at
Accessions : protein= NP_650056;, nucleotide= NM_141799;
Pathway : via spliceosome // inferred by curator /// 0006457 // protein folding // inferred from electronic annotation"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay
FlyMine data for FBgn0037882.
VDRC has 2 RNAi stocks for FBgn0037882 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 34 of 4 1.30Up
Head34 ± 24 of 4 0.80Down
Eye24 ± 34 of 4 0.54Down
Thoracicoabdominal ganglion49 ± 44 of 4 1.10None
Salivary gland26 ± 91 of 4 0.60None
Crop43 ± 24 of 4 1.00None
Midgut12 ± 50 of 4 0.30Down
Tubule43 ± 13 of 4 1.00None
Hindgut21 ± 22 of 4 0.50Down
Heart28 ± 24 of 4 0.63Down
Fat body37 ± 44 of 4 0.85None
Ovary87 ± 24 of 4 2.00Up
Testis15 ± 14 of 4 0.30Down
Male accessory glands28 ± 32 of 4 0.60Down
Virgin spermatheca37 ± 24 of 4 0.84None
Mated spermatheca39 ± 33 of 4 0.88None
Adult carcass31 ± 03 of 4 0.70Down
Larval CNS59 ± 44 of 4 1.34Up
Larval Salivary gland39 ± 34 of 4 0.89None
Larval midgut13 ± 30 of 4 0.30Down
Larval tubule39 ± 34 of 4 0.90None
Larval hindgut26 ± 21 of 4 0.60Down
Larval fat body24 ± 24 of 4 0.50Down
Larval trachea46 ± 74 of 4 1.04None
Larval carcass25 ± 10 of 4 0.57Down
S2 cells (growing)47 ± 34 of 4 1.07None
Whole fly44 ± 24 of 4

Looking for CG17187-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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