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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17189-RA through 18771 annotations produced 1 hits



(CG17189):

Annotation Number : CG17189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039485
Gbrowse : chr3R:22927219-22928531 (+) // 100.0 //
Probeset : 1628173_at
Accessions : protein= NP_651534;, nucleotide= NM_143277;
FlyMine data for FBgn0039485.
VDRC has 3 RNAi stocks for FBgn0039485 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head217 114 of 4 5.80Up
Eye21 32 of 4 0.57Down
Thoracicoabdominal ganglion7 22 of 4 0.20Down
Salivary gland39 23 of 4 1.06None
Crop3 20 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut10 42 of 4 0.30Down
Heart12 21 of 4 0.34Down
Fat body8 40 of 4 0.23Down
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.10Down
Male accessory glands8 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca2 10 of 4 0.06Down
Adult carcass114 134 of 4 3.00Up
Larval CNS3 10 of 4 0.09Down
Larval Salivary gland1 00 of 4 0.05Down
Larval midgut3 11 of 4 0.10Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut2 00 of 4 0.06Down
Larval fat body2 00 of 4 0.10Down
Larval trachea8 53 of 4 0.24Down
Larval carcass2 00 of 4 0.06Down
S2 cells (growing)7 11 of 4 0.21Down
Whole fly37 34 of 4

Looking for CG17189-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime