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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG17196-RA through 18771 annotations produced 1 hits



(CG17196):

Annotation Number : CG17196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039368
Gbrowse : chr3R:21601097-21601928 (-) // 100.0 //
Probeset : 1640218_at
Accessions : protein= NP_001163735; /// NP_651426;, nucleotide= NM_001170264; /// NM_143169;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0039368.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.10Down
Eye1 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland5 ± 30 of 4 0.17Down
Crop2 ± 10 of 4 0.10Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body1 ± 10 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis509 ± 274 of 415.20Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.03Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS1 ± 20 of 4 0.06Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.07Down
Larval fat body50 ± 203 of 4 1.50None
Larval trachea1 ± 10 of 4 0.04Down
Larval carcass2 ± 00 of 4 0.08Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly33 ± 14 of 4

Looking for CG17196-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime