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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1721-RA through 18771 annotations produced 1 hits



Phosphoglyceromutase (Pglym78):

Annotation Number : CG1721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:24973969-24975977 (+) // 100.0 //
Probeset : 1627227_at
Accessions : protein= NP_001034075; /// NP_001034076; /// NP_524546;, nucleotide= NM_001038986; /// NM_001038987; /// NM_079822;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004619 // phosphoglycerate mutase activity //
Homophila reports that CG1721 is a close match (7e-66) to human gene BPGM (NP_954655), a gene associated with Hemolytic anemia due to bisphosphoglycerate mutase deficiency (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 144 of 4 0.70None
Head129 94 of 4 1.10None
Eye103 124 of 4 0.89None
Thoracicoabdominal ganglion174 204 of 4 1.50None
Salivary gland745 774 of 4 6.41Up
Crop222 154 of 4 1.90Up
Midgut225 84 of 4 1.90Up
Tubule144 54 of 4 1.20Up
Hindgut220 114 of 4 1.90Up
Heart122 94 of 4 1.06None
Fat body206 194 of 4 1.77Up
Ovary136 74 of 4 1.20None
Testis63 44 of 4 0.50Down
Male accessory glands211 64 of 4 1.80Up
Virgin spermatheca225 104 of 4 1.93Up
Mated spermatheca242 144 of 4 2.08Up
Adult carcass256 204 of 4 2.20Up
Larval CNS121 144 of 4 1.04None
Larval Salivary gland319 184 of 4 2.75Up
Larval midgut204 34 of 4 1.76Up
Larval tubule142 34 of 4 1.20None
Larval hindgut145 124 of 4 1.25None
Larval fat body217 234 of 4 1.90Up
Larval trachea87 254 of 4 0.75None
Larval carcass291 224 of 4 2.51Up
S2 cells (growing)130 134 of 4 1.12None
Whole fly116 154 of 4

Looking for CG1721-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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